PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0816s0060.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 218aa    MW: 24446.2 Da    PI: 4.6731
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0816s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1884133355
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr+++ +g+++AeIr+ + ng   r++lg+f+tae Aa a+++a+ +++g
  SapurV1A.0816s0060.1.p  84 YRGVRRRP-WGKYAAEIRESTRNG--VRVWLGTFDTAEAAALAYDQAAFAMRG 133
                             9*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.24883141IPR001471AP2/ERF domain
SMARTSM003805.0E-3783147IPR001471AP2/ERF domain
PfamPF008476.1E-1484133IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2384142IPR016177DNA-binding domain
CDDcd000181.49E-2184143No hitNo description
Gene3DG3DSA:3.30.730.101.6E-3084142IPR001471AP2/ERF domain
PRINTSPR003677.0E-118495IPR001471AP2/ERF domain
PRINTSPR003677.0E-11107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MNSQFSPESS SSFNSIDSLS CNTQSFYSQP LPFNENDSQE MLLLGVLNEN PINSFDTVSS  60
TNTSYDEVSS RADYQGEQPR EIAYRGVRRR PWGKYAAEIR ESTRNGVRVW LGTFDTAEAA  120
ALAYDQAAFA MRGSMAVLNF PAQKVYESLK EMGYGFQEGQ SPILAMKKKH IMNRKAEGRK  180
KKERESKTEM ENVVVLEDLG ADYLEELLTI SESASPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2784141360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166181KKKHIMNRKAEGRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319099.21e-124hypothetical protein POPTR_0013s04240g
SwissprotQ8LDC84e-67ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLB9I5M51e-124B9I5M5_POPTR; Uncharacterized protein
STRINGPOPTR_0013s04240.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-52ethylene response factor 1